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Table 19.1. Comparison of the SVD algorithm and dnaml on data from the ENCODE project. Distance between trees is given by the symmetric distance, % correct gives the percentage of the regions which had the correct tree reconstructed.

Table 19.1. Comparison of the SVD algorithm and dnaml on data from the ENCODE project. Distance between trees is given by the symmetric distance, % correct gives the percentage of the regions which had the correct tree reconstructed.

the SVD algorithm came much closer on average and constructed the correct tree much more often than dnaml, which almost never did (see Figure 21.4 for the correct tree and a common mistake).

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