## Example 1 Gastrointestinal Tumor Study

These data were previously analyzed by Stablein and Koutrouvelis (1985). The study reported on the results of a trial comparing chemotherapy versus combined chemotherapy and radiation therapy in the treatment of locally unresectable gastric cancer. There are 45 patients in each treatment group. Figure 1 displays the Kaplan-Meier survival curves. The two survival curves cross, suggesting that the DPT using the DiM functional may not be able to detect the difference, because the means, which are...

## References

Optimal permutation tests for the analysis of group randomized trials. Journal of the American Statistical Association 96 14241432. Bozivich, H., Bancroft, T. A., Hartley, H. O. (1956). Power of analysis of variance test procedures for certain incompletely specified models. Annals of Mathematical Statistics 27 1017-1043. Cochran, W. G. (1977). Sampling Techniques. 3rd ed. New York John Wiley. Cohen, J. (1960). A coefficient of agreement for nominal data. Educational...

## Resampling Methods Westfall and Young 1993 Troendle 1995 1996

Consider the univariate comparisons on the K individual endpoints and order the test statistics Let t(1) V t(2) V V t(K) be the ordered values of the T and H0(i), H0(2), , H0(K) be the corresponding ordered null hypotheses. Determine constants q1, q2 , qK and sequentially accept hypotheses H0(1), H0(2), until the first time t(i) > q,, at which point reject H0(1), , H0(K). The constants q, are determined so that the probability of rejecting any true hypothesis under any parameter configuration...

## Analysis of Biological Markers as Failure Time Data

Rather than comparing levels of biological markers over time or at arbitrarily chosen time points, biological markers can also be used to define time-to-event endpoints, for example, time to achieve either a prespecified fixed level, or percentage change from baseline. For example, a successful outcome can be defined as time to reach a threshold such as< 50 copies of HIV RNA per milliliter (or undetectable viral load on the assays), or a treatment failure can be defined as time to a rebound...

## Contributors

Mathematical Statistician, Biometrics Research Branch, Division of Cancer Treatment and Diagnosis, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, U.S.A. James S. Babb, Ph.D. Department of Biostatistics, Fox Chase Cancer Center, Philadelphia, Pennsylvania, U.S.A. Abdel G. Babiker, Ph.D. Head, Division of HIV and Infections, and Professor of Medical Statistics and Epidemiology, Medical Research Council Clinical Trials Unit, London, England...

## Statistical Methodology Analysis

The analysis of this trial has been performed on an intention to treat basis including as many eligible patients as possible for each endpoint. The statistical analyses were conducted using the SPSS and SAS statistical packages. Survival curves were calculated using the Kaplan-Meier method. The Mantel-Cox version of the logrank statistic was calculated to provide the likelihood portion of the Bayesian analysis see below . Estimated hazard ratios are used to compare treatments Parmar and Machin,...

## Implementation An Example

That useful results can be obtained is illustrated by the blood pressure example previously analyzed by Goetghebeur and Lapp 1997 . A new treatment is compared with placebo in a double blind randomized blood pressure reduction trial, assigning patients to take one tablet daily. Drug intake is electronically monitored over the experimental study period which follows a run-in on placebo. The dosing experience is subsequently summarized in a scalar D 1 representing the percentage of prescribed...

## Example

The Tamoxifen Prevention Trial evaluated the effectiveness of Tamoxifen for preventing breast cancer in high-risk women Fisher et al., 1998 . Tamoxifen was found to be effective, but also led to side effects, including increasing the risk of endometrial cancer. Consequently, there is interest in the identification of other antiestrogen drugs that are as effective as Tamoxifen for preventing breast cancer but with fewer side effects. The Tamoxifen trial randomized 13,388 women and found 175...

## Null Hypothesis Example

g - x ln w 1 - w g x,- - 140 ln 9 1 - 9 g The marginal posterior distribution Pk represents a probabilistic summary of all the information about the MTD that is available after the observation of k patients. Figure 2 shows the marginal posterior distribution of the MTD given the data shown in Table 1. As each patient is accrued to the trial, a decision must be made regarding the dose level that the patient is to receive. In a strict Bayesian setting, the decisions are made by minimizing the...